RnoEX0059015 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37680657-37682471:-
Coord C1 exon
chr3:37682361-37682471
Coord A exon
chr3:37681664-37681777
Coord C2 exon
chr3:37680657-37680761
Length
114 bp
Sequences
Splice sites
3' ss Seq
AACAAACAATTCTTCTACAGAAA
3' ss Score
6.16
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
AAAGAGTATAGGAAAGACCTAGAAGAAAGCATCCGGGGCAGAGGTCTCACTGAAATGGAAGATACTCCCGAAATGCTGAGAGCCAAGAATGCAACTCAAATCCTCAATGAG
Seq A exon
AAAGAATATAAGCGAGACCTAGAGCTGGAAGTCAAAGGAAGAGGCCTGAATGCCATGGCCAACGAGACTCCAGATTTTATGCGGGCCAGGAATGCTACCGACATTGCCAGCCAG
Seq C2 exon
ATTAAGTACAAGCAATCGGCAGAAATGGAAAAGGCCAATTTCACTTCTGTTGTTGATACCCCAGAAATTATCCATGCTCAGCAGGTCAAGAACCTCTCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.838 A=0.474 C2=0.371
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=27.0),PF0088013=Nebulin=PU(55.2=43.2)
A:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTAGAAGAAAGCATCCGG
R:
CTGGCTAGAGAGGTTCTTGAC
Band lengths:
202-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]