BtaEX6009848 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44547311-44552357:+
Coord C1 exon
chr2:44547311-44547375
Coord A exon
chr2:44550623-44550664
Coord C2 exon
chr2:44552157-44552357
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCTTTGTTCTCTATTTCTAGTAT
3' ss Score
9.06
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTTGTAGGTGCCACTACTACTCTGGGAAAATGGCAGATGACGAAGAATATGAGGAGGTGGTGGAG
Seq A exon
TATTACACAGAGGAGACAGTCTATGAAGAGGTGCCAGGGGAG
Seq C2 exon
ACAAGAACAAGATTCTATGAAACTACGACAACAAGGACATCTGACTATGAGCAATCAGAAACCTCCAGACCGGCCCTGGCACAGCCAGTACCTGAAAAGCCGGTGGAGAGGAAGAGGGTTATTCGAAAGAAGGTGGACCCTTCAAAGTTCATGACCCCCTACATTGCACACAGTCAGAAAATGCAGAATCTCTTTAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.714 C2=0.642
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0088013=Nebulin=PU(55.2=23.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCCACTACTACTCTGGG
R:
CCGGTCTGGAGGTTTCTGATTG
Band lengths:
133-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]