GgaEX0018889 @ galGal3
Exon Skipping
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36909981-36916187:-
Coord C1 exon
chr7:36916152-36916187
Coord A exon
chr7:36912147-36912191
Coord C2 exon
chr7:36909981-36910184
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCTTTCTTTAATAGTAC
3' ss Score
8.88
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAAATGGAGGAAGAAGAATATGAGGAAGTTGTAGAG
Seq A exon
TACTACATTGAGGAGACAATTGTTGAGGAGGGTGAACCATATGAG
Seq C2 exon
GTGGTCACTGAGATCACTGACAGCACTAGCACAGAATTCACAGGTCCTACAACCATCACCCGTACGATTGAGTATGAAAAAACTTCTGGTGAGGGTGCAGCAACTCCAGTCAGGAAGAAGACGATACGGACAAAAATGGACACTTCCAAGTTCTTGACACCTTACCTGCAGCACAGTAATAAAATGAAGGACCTGTTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495-'0-3,'0-1,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=0.467 C2=0.603
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0088013=Nebulin=PU(53.6=22.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAAGAAGAATATGAGGAAGT
R:
CTGCACCCTCACCAGAAGTTT
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]