RnoEX6016768 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37849092-37854561:-
Coord C1 exon
chr3:37854526-37854561
Coord A exon
chr3:37850885-37850926
Coord C2 exon
chr3:37849092-37849292
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTGTTCTCTTTACAGTAC
3' ss Score
10.62
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATGGCGGATGAGGAAGAGTATGAGGAGGTGATAGAG
Seq A exon
TACTACACCGAGGAGACGGTGTACGAGGAGGTGCCAGGAGAG
Seq C2 exon
ACAATTACAGAAATCTATGAAACCACAACTACAAGGACATCTGACTATGACCAATCAGAAACTTCCACACCAGCGCTGGCACAGCCACAACCAGCAAAACCGGTGGAGCGGAAGAAGGTCATTCGAAAGAAGGTGGACACGTCCAAGTTCATGACCCCCTACATAGAGCACAGTCAGAAAATGCAGGGTCTTTTCAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.786 C2=0.657
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF093165=Cmyb_C=PU(38.8=92.5),PF0088013=Nebulin=PU(55.2=23.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGGATGAGGAAGAGTATGA
R:
GTTTTGCTGGTTGTGGCTGTG
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]