MmuEX6101203 @ mm9
Exon Skipping
Gene
ENSMUSG00000026950 | Neb
Description
nebulin [Source:MGI Symbol;Acc:MGI:97292]
Coordinates
chr2:52184238-52190030:-
Coord C1 exon
chr2:52189966-52190030
Coord A exon
chr2:52186329-52186370
Coord C2 exon
chr2:52184238-52184438
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTGCTCTGTTTACAGTAC
3' ss Score
8.47
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TTTGTAGGTGCCACTACTACTCTGGAAAAATGGCGGATGAGGAAGAGTATGAGGAGGTGATAGAG
Seq A exon
TACTACACAGAGGAGACAGTTTACGAAGAGGTGCCAGGAGAG
Seq C2 exon
ACAATTACAGAAGTCTATGAGACCACAACGACAAGGACATCGGACTATGGCCAATCAGAAACTGCCACACCAGCGCTGGCACAGCCACAACCAGCAAAGCCGGTGGAGCGGAAGAAGGTCATCCGAAAGAAGGTGGACTCGTCCAAGTTCATGACCCCCTACATTCAACACAGTCAGAAAATGCAGGATCTTTTCAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026950-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.643 C2=0.627
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0088013=Nebulin=PU(55.2=23.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCCACTACTACTCTGGA
R:
GCTGGTGTGGCAGTTTCTGAT
Band lengths:
134-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: