BtaEX6009953 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032277 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr2:53912723-53916036:-
Coord C1 exon
chr2:53915975-53916036
Coord A exon
chr2:53913973-53914044
Coord C2 exon
chr2:53912723-53912797
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATAAATCCATTTCATTGCAGTTA
3' ss Score
5.29
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
GAGCCAATGAGAAAGAAATAGCCCTAATGAATGGTTTGACTGTTAATTTACATCTTCTACTG
Seq A exon
TTATCATTTTTCAAGCCTACACCCAAACGGTATAAAATTCTCCTAGAAGCCAAAGCCTTCCCTTCAGATCAT
Seq C2 exon
TATGCTGTTGAGTCACAGCTTCAACTTCATGGACTTAACATTGAGAAAAGTATGCGGATTATAAAGCCAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032277-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(6.0=100)
A:
PF0026614=Aminotran_5=FE(6.9=100)
C2:
PF0026614=Aminotran_5=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAATGAGAAAGAAATAGCCCT
R:
CTCTCTTGGCTTTATAATCCGCA
Band lengths:
136-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]