RnoEX0047951 @ rn6
Exon Skipping
Gene
ENSRNOG00000029993 | Kynu
Description
kynureninase [Source:RGD Symbol;Acc:71061]
Coordinates
chr3:28469498-28472264:+
Coord C1 exon
chr3:28469498-28469559
Coord A exon
chr3:28470648-28470719
Coord C2 exon
chr3:28472190-28472264
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATAACTCTGTTTCCTTGTAGTTA
3' ss Score
7.79
5' ss Seq
CATGTAAGG
5' ss Score
6.57
Exon sequences
Seq C1 exon
GAGCCCATGAGAAAGAAATAGCTCTAATGAATGCTTTGACTGTTAATTTACATCTCCTGCTG
Seq A exon
TTATCATTCTTTAAGCCTACACCAAAGCGGCACAAAATTCTTCTAGAAGCCAAAGCCTTCCCTTCTGATCAT
Seq C2 exon
TATGCGATCGAGTCACAGATTCAACTTCATGGACTTGATGTTGAGAAAAGTATGCGGATGATAAAGCCACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029993-'7-7,'7-5,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(5.9=100)
A:
PF0026614=Aminotran_5=FE(6.8=100)
C2:
PF0026614=Aminotran_5=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCATGAGAAAGAAATAGCTCT
R:
CTCGTGGCTTTATCATCCGCA
Band lengths:
135-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]