GgaEX0018785 @ galGal3
Exon Skipping
Gene
ENSGALG00000012418 | F1NDY5_CHICK
Description
NA
Coordinates
chr7:34282425-34285536:+
Coord C1 exon
chr7:34282425-34282486
Coord A exon
chr7:34283991-34284062
Coord C2 exon
chr7:34285462-34285536
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTGTTCCTAACAGCTA
3' ss Score
9.91
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GTGCTCAAAGACATGAGGTAGCCTTAATGAATGGACTAACTGTTAACTTGCACCTTCTGATG
Seq A exon
CTATCTTTCTTTAAGCCTACTCCGAGACGCTATAAAATTCTTCTAGAAGCCAAAGCCTTTCCCTCTGACCAT
Seq C2 exon
TATGCTGTTGAGTCCCAGCTTCGATTTCATGGACTCGATGTGGAGAAAAGCATGCTCATGCTGCGGCCACGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418-'7-5,'7-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(11.2=100)
A:
PF0026614=Aminotran_5=FE(12.8=100)
C2:
PF0026614=Aminotran_5=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAAAGACATGAGGTAGCC
R:
GGCCGCAGCATGAGCATG
Band lengths:
129-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]