GgaEX0018785 @ galGal4
Exon Skipping
Gene
ENSGALG00000012418 | KYNU
Description
kynureninase [Source:HGNC Symbol;Acc:HGNC:6469]
Coordinates
chr7:32164176-32199064:+
Coord C1 exon
chr7:32164176-32164237
Coord A exon
chr7:32165742-32165813
Coord C2 exon
chr7:32198972-32199064
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTGTTCCTAACAGCTA
3' ss Score
9.91
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
GTGCTCAAAGACATGAGGTAGCCTTAATGAATGGACTAACTGTTAACTTGCACCTTCTGATG
Seq A exon
CTATCTTTCTTTAAGCCTACTCCGAGACGCTATAAAATTCTTCTAGAAGCCAAAGCCTTTCCCTCTGACCAT
Seq C2 exon
GTAGTCGTTCTGGAGTTGATAGGATTGAGAAAGCTGGGAAGGATTTTACGTTCATGTAACCTACTGTGAAAGGCTGCAGGAGAACTTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012418_MULTIEX2-3/13=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0026614=Aminotran_5=FE(11.2=100)
A:
PF0026614=Aminotran_5=FE(12.8=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAAAGACATGAGGTAGCC
R:
TCAGTAAGTTCTCCTGCAGCCT
Band lengths:
153-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]