BtaEX6009975 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024632 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:56825515-56834167:+
Coord C1 exon
chr2:56825515-56825621
Coord A exon
chr2:56825962-56826094
Coord C2 exon
chr2:56834039-56834167
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCCCATTTGTATTTGAACAGATG
3' ss Score
7.13
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTTCTCCTACTTGCTCGTCAAGTGAATATATATGTGCCAGTGGGGGATGCATTTCAGCATCTTTGAAATGCAATGGAGAATATGACTGTGCTGATGGTTCAGATGAG
Seq A exon
ATGGACTGTGTGACTGAGTGTAAGGAAGATCAGTTTCGATGCAGAAATAAAGCCCACTGTATTCCAATTAGATGGCTTTGTGATGGAATTCATGACTGTGTGGATGGCAGTGACGAAGAGAACTGTGACAGAG
Seq C2 exon
ATGAAGGAGGAAATATATGTAGAGCAGATGAGTTCCTTTGCAACAATTCACTTTGCAAACTACATTTCTGGGTGTGTGATGGAGAAGACGACTGTGGAGACAACTCTGATGAAGCCCCTGACATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024632-'20-20,'20-19,21-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(89.2=91.7)
A:
PF0005713=Ldl_recept_a=PD(5.4=4.4),PF0005713=Ldl_recept_a=WD(100=84.4)
C2:
PF0005713=Ldl_recept_a=WD(100=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCCTACTTGCTCGTCAA
R:
CACACATGTCAGGGGCTTCAT
Band lengths:
236-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]