DreEX6037411 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36828393-36832257:+
Coord C1 exon
chr9:36828393-36828499
Coord A exon
chr9:36831833-36831965
Coord C2 exon
chr9:36832135-36832257
Length
133 bp
Sequences
Splice sites
3' ss Seq
GGTTATTGTGCTCACACCAGATG
3' ss Score
4.74
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
TGCTTCCCTCCTGCTCTCTGAATGAGTATGTGTGTGCCAGCGGAGGCTGTGTATCTGCCAGCCTGAGGTGTGACGGACATGACAACTGTCTGGACAGCTCTGATGAG
Seq A exon
ATGGACTGTGTCAAGGAGTGCAGAGAGGATGAGTTTCTGTGCAAAAACCACGCTCACTGCGTTCCCAAACGATGGCGCTGCGATGACATCTTTGACTGTGTGGACCACAGCGACGAGGAAAATTGCAGTCATG
Seq C2 exon
ATGCCTTTTTCTGTCGCCCTGATGAGTTCATTTGCAATAACACGCTGTGTAAGCTGCACGTGTGGGTGTGCGATGGTGAAGACGACTGCGGAGACAACTCTGATGAAGACCCCGACATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'71-73,'71-72,72-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(89.2=91.7)
A:
PF0005713=Ldl_recept_a=PD(8.1=6.7),PF0005713=Ldl_recept_a=WD(100=84.4)
C2:
PF0005713=Ldl_recept_a=WD(100=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCCTCCTGCTCTCTGAA
R:
CACACATGTCGGGGTCTTCAT
Band lengths:
229-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]