GgaEX1033886 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31406157-31409454:-
Coord C1 exon
chr7:31409348-31409454
Coord A exon
chr7:31408882-31409014
Coord C2 exon
chr7:31406157-31406279
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCACTTCTGTATTCACATAGATG
3' ss Score
6.97
5' ss Seq
AAGGTTGTG
5' ss Score
-0.49
Exon sequences
Seq C1 exon
CATCTCCAACCTGCTCTGTAAGTGAGTACATCTGTGCAAGTGGAGGCTGTATTTCAGCATCTTTGAAATGTAATGGCGAGTATGACTGTGCTGATGGATCTGATGAG
Seq A exon
ATGGATTGTGTAACGGAATGTAAAGAAGATCAGTTTCGATGCAAAAATAAGGCTTACTGTATCCCTGTCAGATGGCTTTGTGATGGAATCCATGACTGTGTGGATGGTAGTGATGAAGAAGACTGTGTCCAAG
Seq C2 exon
GGGGGAGTATATGTAGAGCTGATGAGTTCTTGTGCAACAATTCCCTCTGCAAACTGCATTTTTGGGTTTGTGATGGAGAAGATGACTGTGGAGATAACTCTGATGAAGTCGCTGAAATGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'90-116,'90-115,91-116
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PU(89.2=91.7)
A:
PF0005713=Ldl_recept_a=PD(5.4=4.4),PF0005713=Ldl_recept_a=WD(100=84.4)
C2:
PF0005713=Ldl_recept_a=WD(100=92.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAACCTGCTCTGTAAGTGA
R:
CACACATTTCAGCGACTTCATCA
Band lengths:
228-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]