BtaEX6009986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024632 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr2:56730222-56740528:+
Coord C1 exon
chr2:56730222-56730344
Coord A exon
chr2:56731759-56731940
Coord C2 exon
chr2:56740329-56740528
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTAAATTCTTATTTTGTTAGGTA
3' ss Score
6.82
5' ss Seq
TGGGTTTGT
5' ss Score
0.77
Exon sequences
Seq C1 exon
GGATTAAACAATGTTATTGGTATAGACTTTGATTACAGAGAAGAATTTATCTATTGGATTGATTCCAGTCGACCGAATGGCAGTCGCATAAATAGAATGTGTTTAAATGGAAGTGATATTAAG
Seq A exon
GTAGTGCATAACACAGCCGTCCCCAATGCACTTGCTGTCGATTGGATTGGAAAAAACCTCTATTGGTCTGACACAGAAAAAAGGATCATTGAAGTATCCAAACTTAATGGCTTATACCCTACTATACTTGTTAGCAAAAGGCTGAAGTTTCCCAGGGACCTGTCTTTAGATCCTCGTGCTGG
Seq C2 exon
GTATTTGTATTGGATTGACTGCTGTGAGTACCCTCACATTGGCCGTGTTGGAATGGATGGAACCAATCAGAGTGTTGTCATAGAAACCAAGATTTCTAGACCTATGGCACTAACAATAGATTATGTCAACCATAGACTCTATTGGGCTGATGAAAATCATATCGAGTTTAGCAACATGGATGGATCTCACAGACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024632-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(61.9=63.4)
A:
PF0005812=Ldl_recept_b=PD(33.3=23.0),PF0005812=Ldl_recept_b=WD(100=67.2),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=61.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGAATGGCAGTCGCATAA
R:
TGTGAGATCCATCCATGTTGCT
Band lengths:
244-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]