DreEX6037422 @ danRer10
Exon Skipping
Gene
ENSDARG00000061517 | lrp1bb
Description
low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
Coordinates
chr9:36790812-36800868:+
Coord C1 exon
chr9:36790812-36790934
Coord A exon
chr9:36800297-36800478
Coord C2 exon
chr9:36800669-36800868
Length
182 bp
Sequences
Splice sites
3' ss Seq
ATCCTACTTGTTTGCTTTAGATT
3' ss Score
8.72
5' ss Seq
TGGGTACAG
5' ss Score
0.89
Exon sequences
Seq C1 exon
GGCCTCAACAACATTATCAGCTTAGATTTTGACTACAAGAAGGAGTTTATTTACTGGATTGACTCCAGCAGACCCAGTGGCCGGAGGATAAACCGAATCCGCTTGAATGGCAGCGACCTTAAG
Seq A exon
ATTGTTCACCGAACAGCTGTTCCAAGTGCACTGGCCGTGGACTGGATCGGGAAGAACTTGTACTGGTGTGATGTAGAAAGAAAAACACTGGAAGTCTCCAAATCCAACGGCTTATACCCTACCATTTTAGTGAGCTCGGGCCTGAAAAACCCAACGGACCTGGCACTGGATGCTCAAACTGG
Seq C2 exon
GTACGTGTTCTGGATTGACTGCTGTGAAAATCCTCATGTGGGTCGCATTGGCATGGACGGCCAAGGCCAAAGTGTGATTGTGAACAAAGAGATCTACAGCCCTTCAGCTTTAACCATTGACTACACAAACAAGAGGATCTACTGGGCTGATGATAATCACATCCTTTTTGCCAACATGGACGGTTCTCAGAGGCACCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061517-'58-60,'58-59,59-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(61.9=61.9)
A:
PF0005812=Ldl_recept_b=PD(35.7=24.2),PF0005812=Ldl_recept_b=WD(100=66.1),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACTCCAGCAGACCCAGT
R:
GAGAACCGTCCATGTTGGCAA
Band lengths:
254-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]