GgaEX0018761 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31434735-31436412:-
Coord C1 exon
chr7:31436290-31436412
Coord A exon
chr7:31435368-31435549
Coord C2 exon
chr7:31434735-31434934
Length
182 bp
Sequences
Splice sites
3' ss Seq
GTGATTTTTTGCTTTTCTAGGTA
3' ss Score
11.23
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
GGTCTAAACAATGTGATTGCAATAGACTTTGACTATAGAGAGGAGTTCATCTACTGGATTGATTCCAGCAGACCAAATGGAAGTAGGATAAACAGAATGCGTTTGAATGGAAGTGACATCAAG
Seq A exon
GTAGTCCACAACACAGCTGTTCCCAATGCACTGGCTGTTGATTGGATTGGAAAGAATTTATATTGGTCTGATACTGAAAAGAGAATTATTGAAGTGTCTAAAGTGAATGGCTTATACCCTACTGTCCTTGTGAGCAAAAGAGTGAAGTTTCCTAGAGATCTCTCCTTAGATCCACAAGCTGG
Seq C2 exon
GTACTTGTACTGGATTGATTGCTGTGAGTATCCTCACATTGGCCGTGTTGGTATGGATGGCTCCAGTCAAACTGTTGTCATAGAAACACAGATATCTAGACCTATGGCACTTACAATAGATTATGTCAACCACAGACTGTATTGGGCTGATGAAAATCATATTGAGTTTTCTGACATGGATGGATCTCATAGACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'76-100,'76-99,77-100
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(61.9=63.4)
A:
PF0005812=Ldl_recept_b=PD(33.3=23.0),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=61.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCAGACCAAATGGAAGT
R:
TCCATCCATGTCAGAAAACTCA
Band lengths:
244-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]