BtaEX6010427 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84935884-84941026:-
Coord C1 exon
chr2:84940833-84941026
Coord A exon
chr2:84938243-84938441
Coord C2 exon
chr2:84935884-84936024
Length
199 bp
Sequences
Splice sites
3' ss Seq
AATATTCTTTTTCCTGACAGAGT
3' ss Score
8.23
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GATAAACATGTTCTGTCAGTTGTAACTATTGAGAGGATGCTGGAGAGGCTGAAAAAATCTAATGAGCTTTTGGAACTCATTCTTAAAGGACTTAATGAATATTTGGAAAAGAAACGTCTCTTCTTCCCCAGATTCTTTTTCTTGTCTAATGATGAACTTCTTGAGATCCTATCTGAGACTAAAGATCCCACTAG
Seq A exon
AGTGCAACCTCACTTGAAGAAATGTTTTGAAGGAATTGCAAAGGTGGAATTTACAGAAAGTTTGGACATTACTCACATGAAAAGTAGTGAGGGAGAGGTGGTGGAACTCGTAGACACCATTTCAACAGCCAAAGCCAGAGGTCAAGTGGAGAAGTGGTTGGTTGAGTTAGAGAGAGTTATGATTAAATCCATCCACAAG
Seq C2 exon
GTAATTAAAGATGCAATTCTTGCCTATACACAAAATGAACGAATTAACTGGGTAAGAGAGTGGCCTGGACAAACAGTGCTCTGTGTATCCCAAACCTTTTGGACATTAGAAGTACAGACAGCTATTGCAAAAGGACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'20-22,'20-21,21-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.5=100)
A:
PF083938=DHC_N2=FE(15.9=100)
C2:
PF083938=DHC_N2=PD(2.2=19.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAGGATGCTGGAGAGGC
R:
CTGTTTGTCCAGGCCACTCTC
Band lengths:
242-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]