HsaEX6017563 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196791150-196801516:-
Coord C1 exon
chr2:196801323-196801516
Coord A exon
chr2:196799315-196799513
Coord C2 exon
chr2:196791150-196791290
Length
199 bp
Sequences
Splice sites
3' ss Seq
AAAAATGTTTTTCCTGACAGGGT
3' ss Score
8.77
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GATAAACATGTTCTGACAGTTGTAACCATTGACAGAATGCTGGAAAGGCTGAAAAAATCTAATGAACTTTTGGAGCTCATTCTTAAAGGACTTAATGAATATTTGGAAAAGAAACGCCTCTTTTTCCCCAGATTCTTTTTTTTGTCCAATGATGAACTTCTTGAGATACTATCTGAGACTAAAGATCCCACTAG
Seq A exon
GGTGCAACCTCACTTGAAGAAATGTTTTGAAGGAATCGCAAAGGTAGAATTTACGGAAACTTTAGACATTACTCACATGAAGAGCAGCGAAGGAGAGGTTGTAGAACTCATAGAGATTATTTCAACAGCCAAAGCCAGAGGTCAAGTGGAGAAGTGGTTGGTTGAATTAGAGAGAGTTATGATTAACTCCATCCACAAG
Seq C2 exon
GTAACTGGAGATGCAACTTTTGCCTATACAAAATATGAACGAATTAACTGGGTAAGGGATTGGCCTGGACAGACTGTTCTCTGTGTATCCCAAATCTTTTGGACAAAAGAAGTACAAACAGCTATTCCAATGGGGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.5=100)
A:
PF083938=DHC_N2=FE(15.9=100)
C2:
PF083938=DHC_N2=PD(2.2=19.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAATGCTGGAAAGGCTGA
R:
AGAACAGTCTGTCCAGGCCAA
Band lengths:
243-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)