DreEX0027473 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25217210-25225586:-
Coord C1 exon
chr9:25225393-25225586
Coord A exon
chr9:25218782-25218980
Coord C2 exon
chr9:25217210-25217350
Length
199 bp
Sequences
Splice sites
3' ss Seq
CTGATGGCTTTATGTTCCAGGGT
3' ss Score
8.36
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GACAAGCATGTCCTGGCAGTGGTGGCCATCGAAAAGATGCTAGACAAGATGAAACACAGTAACGAGTTACTGGAACTCATTCTAAAGGGTCTGAATGAATACTTGGAGAAGAAAAGACTCTATTTCCCCCGCTTCTTCTTCTTGTCCAACGATGAGCTGCTGGAGATCCTCTCTGAGACTAAAGATCCAACCAG
Seq A exon
GGTGCAGCCTCACCTGAAGAAGTGCTTTGAGGGTATTGCGAGCGTGGTGTTCACTGATGTTTTGGACATCACTCATATGAGAAGCAGTGAAGGTGAGGTGGTGGAGCTACTAGATATCATCTCTACCTCTAAAGCTCGTGGGCAGGTGGAAAAATGGCTCCTGGAGCTGGAGAATGGCATGCTTCGCTCTATACACAAG
Seq C2 exon
GTGATTGGAAAGGCATGTGAAGCATATCTGAATGATCTACGGATCAATTGGGTCAGAGCCTGGCCGGGCCAGACAGTGCTTTGTGTGTCGCAGGTTTACTGGACAAAGGACATTCATGAAGCCATTGCAAAGGGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'19-20,'19-19,20-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.4=100)
A:
PF083938=DHC_N2=FE(15.9=100)
C2:
PF083938=DHC_N2=PD(2.2=19.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCATGTCCTGGCAGTG
R:
GGCTCTGACCCAATTGATCCG
Band lengths:
253-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]