GgaEX6041811 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10735770-10739027:-
Coord C1 exon
chr7:10738834-10739027
Coord A exon
chr7:10737830-10738028
Coord C2 exon
chr7:10735770-10735910
Length
199 bp
Sequences
Splice sites
3' ss Seq
ATACTACTTTTGCCTTCTAGAGT
3' ss Score
8.1
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GACAAACATGTGCTGGCCGTGGTAACAATAGACAAGATGTTGGAAAAACTGAGGAAGTGCAATGAATTTCTGGAGATAATTCTCAAGGGACTTAATGAATACCTAGAGAAGAAGCGCCTGTTTTTCCCCAGATTCTTTTTTTTATCTAATGATGAACTCCTTGAGATTCTTTCAGAGACCAAAGATCCTACCCG
Seq A exon
AGTACAACCTCACCTGAAAAAGTGTTTTGAAGGAATTGCAAGAGTAGAGTTTACTGATGTGTTAGATATTACACACATTAAAAGTAGTGAAGGAGAGACTGTGGAACTCACGCAGACCATTTCAACTTCTGAAGCTAGAGGTCAAGTTGAAAGATGGCTCGTTGAACTGGAGGCGGCTATGCTGAACTCTGTCCACAAG
Seq C2 exon
GTTATTCAGGACGCAATTGAAGCTTATCCCAAAACTCCACGTGTTGATTGGGTACGAGAGTGGCCTGGACAAACAGTTCTTTGTGTATCCCAAACTTTTTGGACGATGCAGGTAGAAATGGCTATTAGAAATGGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'7-7,'7-6,8-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.5=100)
A:
PF083938=DHC_N2=FE(15.9=100)
C2:
PF083938=DHC_N2=PD(2.2=19.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAACATGTGCTGGCCGT
R:
CGTACCCAATCAACACGTGGA
Band lengths:
250-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]