BtaEX6010429 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84925967-84936024:-
Coord C1 exon
chr2:84935884-84936024
Coord A exon
chr2:84929367-84929579
Coord C2 exon
chr2:84925967-84926076
Length
213 bp
Sequences
Splice sites
3' ss Seq
TATATCTTATTTTCTTTCAGGCC
3' ss Score
10.92
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTAATTAAAGATGCAATTCTTGCCTATACACAAAATGAACGAATTAACTGGGTAAGAGAGTGGCCTGGACAAACAGTGCTCTGTGTATCCCAAACCTTTTGGACATTAGAAGTACAGACAGCTATTGCAAAAGGACAAGAG
Seq A exon
GCCCTTGAGGAATATTTGGAAAGATGTAACAAGCAAATTGATGATATTGTCACGTTGGTTCGTGGCAAATTGTCCAAGCAAAATCGTGTTACTCTGGGAGCCCTTGTGGTGCTGGATGTCCATGCTAGAGATGTTCTCACAACACTTGTTAAAAAGAAAGTTAATGATGACTCGGACTTTGAATGGTTAAGTCAGCTTAGGTACTATTGGCAA
Seq C2 exon
GAAAATAATTTAGAAACAAAGATGATCAATGCTGGCTTACGATATGGATATGAATATCTGGGCAATTCCCCTAGGCTGGTTATTACTCCACTCACTGACAGATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'22-24,'22-23,23-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(2.2=19.1)
A:
NO
C2:
PF127742=AAA_6=PU(9.5=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTTGCCTATACACAAAATGAACG
R:
CTGTAACATCTGTCAGTGAGTGGA
Band lengths:
236-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]