HsaEX6017565 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:195922088-195926566:-
Coord C1 exon
chr2:195926426-195926566
Coord A exon
chr2:195923595-195923807
Coord C2 exon
chr2:195922088-195922197
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTTATTTTCTTTTCTTTCAGGCT
3' ss Score
10.9
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTAACTGGAGATGCAACTTTTGCCTATACAAAATATGAACGAATTAACTGGGTAAGGGATTGGCCTGGACAGACTGTTCTCTGTGTATCCCAAATCTTTTGGACAAAAGAAGTACAAACAGCTATTCCAATGGGGATAAAG
Seq A exon
GCTCTTGAGCAATACTTGAAAACATGTAACAGACAAATTGATGATATTGTCACTTTGGTGCGTGGCAAATTGTCCATGCAGAATCGCGTAACTCTGGGAGCACTTGTGGTACTGGATGTCCATGCTAGAGATGTCCTCTCATCACTTGTAAAAAAAAATATTAGCGATGACTCTGACTTTGAATGGTTAAGTCAGCTTAGGTACTACTGGCAA
Seq C2 exon
GAAAATCATTTAGAAACAAAAATGATCAATGCTGGTTTGCGATATGGATATGAATATCTGGGTAATTCCCCTAGGCTGGTTATTACACCACTCACGGATAGATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'39-37,'39-36,41-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(2.2=19.1)
A:
NO
C2:
PF127742=AAA_6=PU(25.0=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAATATGAACGAATTAACTGGGT
R:
AACATCTATCCGTGAGTGGTGT
Band lengths:
220-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains