GgaEX1020206 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9239886-9245096:-
Coord C1 exon
chr7:9244956-9245096
Coord A exon
chr7:9241293-9241505
Coord C2 exon
chr7:9239886-9239995
Length
213 bp
Sequences
Splice sites
3' ss Seq
ACTTGTAAAAATTTCCTCAGGCA
3' ss Score
5.48
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTATTCAGGACGCAATTGAAGCTTATCCCAAAACTCCACGTGTTGATTGGGTACGAGAGTGGCCTGGACAAACAGTTCTTTGTGTATCCCAAACTTTTTGGACGATGCAGGTAGAAATGGCTATTAGAAATGGCCAGAAG
Seq A exon
GCACTAGAGGATTTTCTGGAACAGAATAATAGACAGATAGAGGACATTGTCACCTTGGTGCGAGGAAAGCTGTCTAAGCAGAATCGTGTGACGCTTGGAGCACTTGTTGTGCTTGATGTTCATGCTAGGGATGTTCTTGCATCTCTAGTAAGCAAGAAAATCAAAGATGAGAATGATTTTGAATGGCTAAGTCAGCTAAGATACTACTGGGAG
Seq C2 exon
GAAGGACATCTTCAAACAAGAATGATCAATGCTGGACTGAGATATGGATATGAATATCTTGGCAATACACCTAGGCTGGTTATTACTCCACTTACAGACAGATGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(2.2=19.1)
A:
NO
C2:
PF127742=AAA_6=PU(9.5=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGGACGCAATTGAAGCT
R:
AGCATCTGTCTGTAAGTGGAGT
Band lengths:
244-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]