DreEX6036404 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25216080-25217350:-
Coord C1 exon
chr9:25217210-25217350
Coord A exon
chr9:25216328-25216540
Coord C2 exon
chr9:25216080-25216189
Length
213 bp
Sequences
Splice sites
3' ss Seq
AATTGTTATTCTGTTTTCAGGCT
3' ss Score
8.42
5' ss Seq
ATTGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
GTGATTGGAAAGGCATGTGAAGCATATCTGAATGATCTACGGATCAATTGGGTCAGAGCCTGGCCGGGCCAGACAGTGCTTTGTGTGTCGCAGGTTTACTGGACAAAGGACATTCATGAAGCCATTGCAAAGGGACCAAAG
Seq A exon
GCTCTTCAGGCTTATCTGGAGCAGAACAATACTCAGATAGATGACATTGTCACTCTGGTTCGTGGAAAGCTTTCCAAACAGAACCGAGTGACACTTGGAGCACTGGTGGTGCTAGACGTTCACGCCCGAGATGTATTGGCATCTCTGGTACAGAAGGGTGTTGATGATGAGACCAACTTTGAGTGGCTCAGCCAGCTGCGCTACTATTGGATT
Seq C2 exon
GAGAACCAGCTTCATACAAAGATGATCAATGCAGGCTTGGCGTATGGCTACGAGTATCTTGGAAACACACCACGACTGGTGATCACCCCTCTCACTGATCGCTGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=PD(2.2=19.1)
A:
NO
C2:
PF127742=AAA_6=PU(9.5=59.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGGAAAGGCATGTGAAGC
R:
TAGCAGCGATCAGTGAGAGGG
Band lengths:
248-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]