BtaEX6010445 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84872071-84878515:-
Coord C1 exon
chr2:84878296-84878515
Coord A exon
chr2:84874252-84875124
Coord C2 exon
chr2:84872071-84872300
Length
873 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTAATTATTGTACAGGTC
3' ss Score
7.78
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
TTATAAATTTCCAGATGACTTTCTAGATTTGACAACACAAATTGTAAATGGTACAATGACTCTGTATAAAGAAGCAATGAAGAATCTCTTGCCTACTCCAGCTAAATCTCACTACCTGTTCAACCTCCGAGATTTCTCCCGTGTCATTCAGGGTGTATGTTTGTCAAGACCAGAAACAGCAGAGACCAAAGAAGTGATTAAACGTCTTTGGGTTCATGAG
Seq A exon
GTCCTGAGAGTGTATTATGATCGCCTTCTGGATAATGCAGACAGAAGTTGGCTTATCAGCTACATTCAAGAAATCTTAAAAACATATATGGAAGAAAATTTTCATGAGCTTTTTCAAAGTTTGGATTTTGATAATGATGGGATAGTGGAAGAAGATGATTTACGCAGCTTAATGTTCTGTGATTTCCACGATCCCAAGAGAGAGGATACCAACTACAGAGAAATTGCAGATGTGGATGCTCTCCGGGTGATAGCAGAAGCTCACCTAGAAGAATACAACAACATGAGCAAGAAAACAATGAACCTTGTCTTGTTCCGGTTTGCCATCGAGCACATCAGCAGAATTTCCAGGATCCTGAAACAGCCTCGCAGCCATGCTCTTCTGGTTGGTGTTGGAGGGAGTGGAAGGCAGTCCGTCACCAGATTAGCTGCCCACATGGCTGATTCTTCAGTATTCCAGGTTGAAATTTCCAAGGGCTATGGTAACTCTGAGTGGCATGAAGATTTAAAAGTGATCTTAAGAAAATGTGCTGAAGGGGAGATGCAGGGTGTTTTCCTATTTACAGATACTCAGATTAAAAAGGAGTCGTTTCTAGAAGATGTCAACAATCTGCTAAATGCTGGGGAGGTTCCAAATCTCTTTGCATTGGATGAGAAACAGGAGATATGTGATAAGATGCGTCAGATAGATCGCCAACGGGATAAAACCAAACAAACAGACGGAAGCCCCATAGCTCTTTTCAACATGTTTGTTGACCGCTGCCGCAACCAACTGCACGTTGTCCTTGCCATGAGTCCCATTGGAGATGCCTTTCGGATTCGTCTTAGAAAGTTCCCTGCTCTAGTAAACTGCTGTACCATTGACTGGTTTCAG
Seq C2 exon
TCCTGGCCTGAAGACGCACTACAGGCAGTTGCCTCCCGCTTCCTGGAAGACATTGAAATGTCAGAGGAAATACGAGATGGCTGCATTGAGATGTGTAAAAGCTTCCACACTTCTACTATAGATTTATCCACATCCTTCTATGTTGAACTTCAAAGATACAATTATGTGACACCTACCTCTTATCTTGAATTAATCTCTACCTTCAAACTGTTGTTGGAAAAGAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'41-45,'41-44,42-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(26.6=100)
A:
PF127802=AAA_8=PU(73.2=68.4)
C2:
PF127802=AAA_8=PD(26.1=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCTCTTGCCTACTCCAGCT
R:
TCCAACAACAGTTTGAAGGTAGAGA
Band lengths:
358-1231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]