HsaEX6017582 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196726441-196737193:-
Coord C1 exon
chr2:196736974-196737193
Coord A exon
chr2:196728873-196729745
Coord C2 exon
chr2:196726441-196726670
Length
873 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTAATTATTATACAGGTC
3' ss Score
7.89
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
TTATAAATTTCCAGATGAATTTCTAGATTTGACCACACAAATCGTAAATGGCACAATGACTCTGTATAAAGAAGCAATGAAGAATCTCTTGCCTACTCCAGCTAAATCTCACTACTTGTTCAACCTCCGTGATTTCTCCCGTGTCATTCAAGGTGTTTGTTTGTCAAGACCAGAAACAACAGAAACCACAGAAGTGATTAAACGTCTTTGGGTTCATGAG
Seq A exon
GTCCTTCGAGTGTATTATGACCGCCTTCTGGACAATACAGACAGAAGCTGGCTCATCAACTACATTCAAGAAATTTTGAGAAACTACATGTATGAAGATTTTCATGAGCTTTTTCAGCGTTTGGATTTTGATAATGATGGCATGGTGGAAGCAGATGACTTACGCAGCTTAATGTTTTGTGATTTCCATGATCCCAAGAGGGAGGATACCAACTACAGAGAAATCGCAGATGTGGATAATCTTCGAATGATAGTAGAAATTCACCTAGAAGAATACAACAATATAAGCAAAAAACCCATGAACCTTGTCTTGTTTCGATTTGCCATAGAGCACATCAGCAGAATTTCCAGGATCCTGAAGCAGCCTCGCAGCCATGCTCTCCTAGTAGGGGTTGGAGGGAGTGGAAGGCAGTCTGTCACCAGATTAGCTGCCCACATGGCTGATTATTCAGTTTTCCAAGTTGAAATCTCTAAGGGGTATGATACTACTGAATGGCATGAAGATTTAAAAGTGATCTTAAGGAAATGTGCGGAAGGTGAGATGCAGGGTGTCTTCCTGTTTACAGATACTCAAATTAAAGAAGAGTCTTTTCTGGAAGATGTCAGTAATCTGCTAAATGCTGGGGAGATTCCAAATCTCTTTGCATTAGATGAGAAGCAAGAGATATGTGATAAGATGCGTCAGTTAGATCGCCAGCGGGATAAAACCAAGCAAACAGATGGCAGCCCCATAGCCCTTTTCAACATGTTTATTGATCATTGCCGCAGCCAACTGCATGTGGTCCTTGCCATGAGTCCCATTGGAGATGCATTTCGGAATCGTCTTAGAAAGTTCCCTGCTCTTGTTAACTGCTGTACCATTGACTGGTTTCAG
Seq C2 exon
TCATGGCCTGAAGATGCACTCCAGGCAGTTGCCTCACGATTCTTGGAAGAAATTGAAATGTCAGAGGAAATACGAGATGGCTGTATCGACATGTGTAAAAGCTTCCACACTTCTACTATAGATTTATCCAAATCTTTCTTTGTTGAACTTCAAAGATACAATTATGTGACTCCTACCTCTTACCTCGAATTAATCTCCACCTTCAAACTGTTGTTAGAAAAGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'45-46,'45-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(26.6=100)
A:
PF134051=EF-hand_6=WD(100=10.0),PF127802=AAA_8=PU(73.2=68.4)
C2:
PF127802=AAA_8=PD(26.1=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCTCTTGCCTACTCCAGCT
R:
ACAACAGTTTGAAGGTGGAGA
Band lengths:
354-1227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)