DreEX6036416 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25181803-25183343:-
Coord C1 exon
chr9:25183124-25183343
Coord A exon
chr9:25182170-25183042
Coord C2 exon
chr9:25181803-25182032
Length
873 bp
Sequences
Splice sites
3' ss Seq
TTAAATCTTCTCTTGTGCAGGTC
3' ss Score
9.89
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ATTTCCATTTCCCAAACCGTTTGCAAGCGTCACCTCTCAGATCATTAGTGCCACTATGTCTGTGTACCAAGAGGCTACTAAGAACCTTCTACCAACCCCAGCTAAATCCCATTACCTTTTCAATCTTCGAGATTTTTCCCGCGTCATTCAGGGTATCTGCTTATCACGGCCAGAAACTGCAGACGACCTTACAGCCATCAAACGGTTATGGGTGCATGAG
Seq A exon
GTCCTGAGAGTGTATTATGACCGTTTAGTTCATCCGGATGATTGTGCATGGATGGTGGGCTTCCTGCAAGAAGTCTCCAAATCTCACCTGAATGAAGATTTCCATCAGCTCTTCAAGCATCTAGACAGCAACTCAGATGGACTTGTAACTGAAGATGATCTTCGCAGCCTCATGTTCTGTGATTTTCATGACCCCAAGGGTGAGGACCGCAACTACCGTGAAGTGGGTGATGCTGAGAAGCTCCGTCAAGTGGTGGAGACCCATCTTGAAGAGTACAATAATATCAGCAAGGCTCCCATGAATCTTGTACTTTTCCGATTTGCCATTGAGCATGTTTGTCGAATCTCCCGCATTCTCAAGCAGCCCCGTGGTCATGCTCTCCTTGTAGGTGTTGGAGGGAGTGGACGACAGTCATTGACTCGCTTGGCCGCCCACATGGCTGAAGCCGAACTCTTCCAAGTAGAGATCTCCAAGAGTTATGGAGTTTCCGAATGGCGAGACGACCTCAAACTCATCATGCAAAAATCAACATCTGGGGATACTCATGGAGTCTTCCTATTCACAGACACCCAGATTAAGATGGAGTCATTTTTAGAAGATGTGAGTAACTTGTTAAACACTGGTGAAGTTCCCAATCTCTTTGCTGTAGATGAGAAGCAGGAGATTTGTGAGCGCATGCGTGTCTTGGACCGTCAGCGGGATCGTGACAAGCAGACGGATGGCAGCACGCTGGCTCTCTTTAACATGTTTTTAGAGCGCTGTCGCAGTCAGTTGCACGTGGTGCTAGCCATGAGTCCTATTGGTGATACCTTCAGAAGCCGCCTGCGACGTTTCCCTGCTCTCATTAACTGCTGCACTATTGACTGGTTTCAG
Seq C2 exon
AGCTGGCCAGAAGATGCACTGCAGGCTGTGGCCTCTCGTTTCCTGGAAGACGTTGAAATGACAAACACTGCTCGTGAAGGCTGTATCAGCATGTGCAAGAGCTTCCACACATCCACCATCGATCTCTCTGCACATTTCCTTTCAGAGCTGCAGCGCTACAACTATGTCACACCAACCTCCTATTTGGAGCTTATCTCTATGTTCAAACACCTACTCCAGCGCAAAAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'39-40,'39-39,40-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(26.6=100)
A:
PF0003627=EF-hand_1=WD(100=9.6),PF127802=AAA_8=PU(73.2=68.4)
C2:
PF127802=AAA_8=PD(26.1=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACCCCAGCTAAATCCCA
R:
CTTTTGCGCTGGAGTAGGTGT
Band lengths:
357-1230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]