MmuEX0015023 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46283663-46293667:+
Coord C1 exon
chr1:46283663-46283882
Coord A exon
chr1:46290324-46291196
Coord C2 exon
chr1:46293438-46293667
Length
873 bp
Sequences
Splice sites
3' ss Seq
CCACTTTTAAAATTATTCAGGTC
3' ss Score
7.52
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
TTATAAGTTTCCAGATGATTTTCTAGACTTGACTACACAAATAGTGAATGGTACAATGGCCCTGTACAAAGATGCCATGAAGAATCTCTTACCTACTCCAGCTAAATCTCACTATTTGTTCAACCTTCGAGATTTCTCCCGAGTCATACAAGGTGTTTGTTTGTCAAGACCAGAAACAGCAGAAAACAAAGAGGCCATTAAACGCCTGTGGGTTCATGAG
Seq A exon
GTCCTCAGAGTATATTATGATCGCCTTGTGGATAATGCTGACAGAAGCTGGCTTATTCACTACATACAAGAAATTCTGAAAAATTACATGCAGGAAGATTTCCATGACCTATTTAAAAACTTGGATTTTAATCAGGATGGCACTGTTGAAGAAGACGATTTAAGAAGTTTAATGTTTTGTGATTTCCATGATCCTAAGAGGGAAGATTTTGGCTACAGAGAAATTGCAAATGTGGATGCTCTCAGGATGATTGTCGAAGGCCATCTAGATGAATATAACAACATGAGCAAAAAGCCCATGAATCTCGTCTTGTTCAGATTTGCCATAGAACACATAAGCAGAATTTCTCGAATCTTGAAGCAGCCACGGAGCCACGCCCTCCTGGTGGGGGTGGGCGGGAGCGGAAGGCAGTCAGTCACCAGACTTGCTGCACACATGGCTGATTATTCACTATTTCAGGTGGAAATCTCCAAGGGCTACGGTAGCCATGAGTGGCATGAAGATCTGAAAGTGATCTTAAGAAAATGTGCAGAGAATGACATGCAGGGGGTCTTCCTGTTCACAGATACACAAATAAAAAGAGAGTCATTTCTAGAAGATGTCAACAATCTCCTAAACGCCGGGGAGGTTCCAAACCTCTTTGCTTTAGATGAAAAGCAAGAAATATGTGAAAAGATGCGTCAGTTAGATCGCCAGCGGGATAAAACTAGACAGACAGATGGGAGCCCCATAGCTCTTTTCAACATGTTTATTGACCGCTGCCGCAACCAGCTGCATGTGGTCTTGGCCATGAGCCCCATCGGAGACGCATTTCGGATTCGTCTTCGGAAATTCCCTGCTCTTGTTAACTGCTGTACCATTGACTGGTTTCAG
Seq C2 exon
TCATGGCCAGAAGATGCTCTGGAAGCAGTTGCTTCAAGGTTCCTGGAAGACATTGAGATGTCAGAGGAAATCCAAGAAGGCTGTATTGACATGTGTAAAAGGTTCCACACGTCTACTATCAACTTATCAACGTCCTTCCACAATGAACTTCAAAGATATAATTATGTGACTCCCACCTCCTACCTGGAATTGATCTCTACCTTCAAACTGTTGTTAGAAAAGAAAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'44-41,'44-40,45-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(26.6=20.0),PF134051=EF-hand_6=WD(100=8.2),PF127802=AAA_8=PU(73.2=54.5)
A:
PF134051=EF-hand_6=WD(100=10.3),PF127802=AAA_8=PU(73.2=68.4)
C2:
PF127802=AAA_8=PD(26.1=38.0),PF127772=MT=PU(29.4=55.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTGTACAAAGATGCCAT
R:
CAGGTAGGAGGTGGGAGTCAC
Band lengths:
349-1222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: