GgaEX1020222 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9216177-9220487:-
Coord C1 exon
chr7:9220268-9220487
Coord A exon
chr7:9217284-9218156
Coord C2 exon
chr7:9216177-9216406
Length
873 bp
Sequences
Splice sites
3' ss Seq
TAACTATTTTGATCATACAGGTC
3' ss Score
8.32
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTATACCTTTCCACCACAATATGTTGAATTGATTCCACAAATTATTAATGGAACCATGCGTATATATAAAGAAGCTATGAAGAATCTACTTCCTACCCCAGCTAAATCACACTATCTGTTCAATCTCCGTGATTTTTCACGTGTTATTCAAGGTGTTTGCCTGTCAAGGCCTGATACAACAGAATCTACAGGAATGATAAAACGTCTCTGGGTTCATGAG
Seq A exon
GTCCTTAGAGTATATTATGATCGCTTGGTCGATAATCCTGATCGGGCTTGGCTTGTTGGATTTATCCAAGAAGTTGTGAATAAAGACTTGCATGAAGACTTTCATGAACTTTTTCAGGATCTGGACTCCAATAATGATGGCAGAGTGGAGGAAGATGACTTACGTACCTTAATGTTTTGTGATTTTCATGACCCTAAAAGAGACGACACTAAATATAGAGAGATCACTGATGCAGATCAGCTGAGATTAGTTGTGGAGAGTCACCTTGAAGAGTTTAATAACTTAAGCAAAAAGCCAATGCAGCTAGTCTTGTTCCAATTTGCTATAGAACATATTTGTAGAATTTCCCGTATTCTGAAACAGCCTCGTAGCCATGCCCTCCTTGTTGGTGTTGGAGGTAGTGGTCGACAGTCTCTTACTCGATTAGCAGCCCATATGGCTGAGTATAATCTTTTCCAGGTTGAAATAACTAAAAGTTATGGTATCAATGAATGGCACAAAGACTTAAAAGACATACTAAGAAAATCTACGGAAGCAGAAATGCAGGGAGTTTTCTTGTTCACCGACACACAGATAAAAAAAGAGTCATTCTTAGAAGACATTAACAACTTACTAAATGCAGGTGAAGTGCCAAACCTTTTTGCAGTAGATGAGAAACAAGAAATTTGTGAACAAATGCGTCAAATAGATCGCCAGAGGGACAGGACAAAACAAACTGATGGTAGTCCTATAGCTCTGTTTAACATGTTTGTTGATTGCTGCCGAAATCAGCTTCATATAGTATTGGCAATGAGTCCAATTGGAGATGCTTTCCGTAATCGCCTTCGTAAATTTCCTGCTCTTGTCAACTGCTGCACACTAGACTGGTTTCAG
Seq C2 exon
ACGTGGCCTGAAGATGCATTGGAAGCAGTTGCCTCTCGCTTCTTGGAAGATGTTGAAATGTCAGAAGAAACTCGAAGTGGGTGTATTGACATGTGTAAAAGCTTTCATACGTCTACCATTGTTTTATCTGATTTATACCATGCGGAGCTTCAAAGACACAACTATGTTACACCTACTTCGTACTTGGAATTGATCTCCACTTTTAAAACTCTGCTTGAAAAGAAGCGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(26.6=100)
A:
PF0003627=EF-hand_1=WD(100=9.6),PF127802=AAA_8=PU(73.2=68.4)
C2:
PF127802=AAA_8=PD(26.1=92.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAATTATTAATGGAACCATGCG
R:
TGTCTTTGAAGCTCCGCATGG
Band lengths:
344-1217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]