BtaEX6010446 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84866436-84875124:-
Coord C1 exon
chr2:84874252-84875124
Coord A exon
chr2:84872071-84872300
Coord C2 exon
chr2:84866436-84866766
Length
230 bp
Sequences
Splice sites
3' ss Seq
GCGTTTATCTTAACATTCAGTCC
3' ss Score
6.16
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
ATGCTCTTCTGGTTGGTGTTGGAGGGAGTGGAAGGCAGTCCGTCACCAGATTAGCTGCCCACATGGCTGATTCTTCAGTATTCCAGGTTGAAATTTCCAAGGGCTATGGTAACTCTGAGTGGCATGAAGATTTAAAAGTGATCTTAAGAAAATGTGCTGAAGGGGAGATGCAGGGTGTTTTCCTATTTACAGATACTCAGATTAAAAAGGAGTCGTTTCTAGAAGATGTCAACAATCTGCTAAATGCTGGGGAGGTTCCAAATCTCTTTGCATTGGATGAGAAACAGGAGATATGTGATAAGATGCGTCAGATAGATCGCCAACGGGATAAAACCAAACAAACAGACGGAAGCCCCATAGCTCTTTTCAACATGTTTGTTGACCGCTGCCGCAACCAACTGCACGTTGTCCTTGCCATGAGTCCCATTGGAGATGCCTTTCGGATTCGTCTTAGAAAGTTCCCTGCTCTAGTAAACTGCTGTACCATTGACTGGTTTCAG
Seq A exon
TCCTGGCCTGAAGACGCACTACAGGCAGTTGCCTCCCGCTTCCTGGAAGACATTGAAATGTCAGAGGAAATACGAGATGGCTGCATTGAGATGTGTAAAAGCTTCCACACTTCTACTATAGATTTATCCACATCCTTCTATGTTGAACTTCAAAGATACAATTATGTGACACCTACCTCTTATCTTGAATTAATCTCTACCTTCAAACTGTTGTTGGAAAAGAAAAGGAG
Seq C2 exon
TGAAGTCATGAAAATGAAAAAGAGGTATGAAGTGGGTTTGGATAAACTGGATTCTGCTGCATCTCAAGTAGCCACAATGCAATTCGAGTTAGAGGCTCTACATCCTCAGTTAAAAGTTGCTAGCAAAGAGGTTGATGAAATGATGTTGATCATTGAGAGGGAATCGGTAGAAGTTTCCAAAACTGAAAAAATCGTGAAAGCTGATGAAACAATAGCAAATGAACAAGCTATGGCTGCCAAAGCCATTAAAGATGAATGTGATGCTGACCTGGCGGGGGCTTTGCCCATATTAGAGTCAGCACTGACAGCCCTTGACACCCTCACTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'42-46,'42-45,43-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(73.2=68.4)
A:
PF127802=AAA_8=PD(26.1=92.2)
C2:
PF127772=MT=PU(29.3=92.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGATAGATCGCCAACGG
R:
AGAGCCTCTAACTCGAATTGCA
Band lengths:
294-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]