DreEX6036417 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25181333-25183042:-
Coord C1 exon
chr9:25182170-25183042
Coord A exon
chr9:25181803-25182032
Coord C2 exon
chr9:25181333-25181663
Length
230 bp
Sequences
Splice sites
3' ss Seq
ATCATTGTATGTTTCAAAAGAGC
3' ss Score
3.53
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
ATGCTCTCCTTGTAGGTGTTGGAGGGAGTGGACGACAGTCATTGACTCGCTTGGCCGCCCACATGGCTGAAGCCGAACTCTTCCAAGTAGAGATCTCCAAGAGTTATGGAGTTTCCGAATGGCGAGACGACCTCAAACTCATCATGCAAAAATCAACATCTGGGGATACTCATGGAGTCTTCCTATTCACAGACACCCAGATTAAGATGGAGTCATTTTTAGAAGATGTGAGTAACTTGTTAAACACTGGTGAAGTTCCCAATCTCTTTGCTGTAGATGAGAAGCAGGAGATTTGTGAGCGCATGCGTGTCTTGGACCGTCAGCGGGATCGTGACAAGCAGACGGATGGCAGCACGCTGGCTCTCTTTAACATGTTTTTAGAGCGCTGTCGCAGTCAGTTGCACGTGGTGCTAGCCATGAGTCCTATTGGTGATACCTTCAGAAGCCGCCTGCGACGTTTCCCTGCTCTCATTAACTGCTGCACTATTGACTGGTTTCAG
Seq A exon
AGCTGGCCAGAAGATGCACTGCAGGCTGTGGCCTCTCGTTTCCTGGAAGACGTTGAAATGACAAACACTGCTCGTGAAGGCTGTATCAGCATGTGCAAGAGCTTCCACACATCCACCATCGATCTCTCTGCACATTTCCTTTCAGAGCTGCAGCGCTACAACTATGTCACACCAACCTCCTATTTGGAGCTTATCTCTATGTTCAAACACCTACTCCAGCGCAAAAGAAC
Seq C2 exon
GGAAGTCATGAAGCTGAAGAGTCGTTATGAGGTTGGTCTTCAGAAGCTGGAATCGGCTGCCACACAGGTGTCCACAATGCAGGGGGAGCTGGAGGCTCTTCAGCCTCAGCTGCGAGTTGCAACTAAAGAGGTGGAAGAGATGATGGTGGTCATTCAGCATGAGTCTGAAGAGGTGTCCAAGACAGAGAAGGTGGTCCGTGTGGATGAAGCGGAGGCTAATGAGCAGGCCATGGCTGCCAAGGCCATTAAAGATGAATGTGACGCCGATCTGGCGGTTGCTGTGCCCATCCTGGAAGCTGCACTGGCTGCTTTGGACACACTCACCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.072
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=WD(100=9.6),PF127802=AAA_8=PU(73.2=68.4)
A:
PF127802=AAA_8=PD(26.1=92.2)
C2:
PF127772=MT=PU(29.3=92.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGTTTCCCTGCTCTCATT
R:
TTTAATGGCCTTGGCAGCCAT
Band lengths:
298-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]