GgaEX7005844 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9215061-9218156:-
Coord C1 exon
chr7:9217284-9218156
Coord A exon
chr7:9216177-9216406
Coord C2 exon
chr7:9215061-9215391
Length
230 bp
Sequences
Splice sites
3' ss Seq
TGTTTATCCGTTTGTTATAGACG
3' ss Score
7.39
5' ss Seq
CACGTAAGG
5' ss Score
7.47
Exon sequences
Seq C1 exon
ATGCCCTCCTTGTTGGTGTTGGAGGTAGTGGTCGACAGTCTCTTACTCGATTAGCAGCCCATATGGCTGAGTATAATCTTTTCCAGGTTGAAATAACTAAAAGTTATGGTATCAATGAATGGCACAAAGACTTAAAAGACATACTAAGAAAATCTACGGAAGCAGAAATGCAGGGAGTTTTCTTGTTCACCGACACACAGATAAAAAAAGAGTCATTCTTAGAAGACATTAACAACTTACTAAATGCAGGTGAAGTGCCAAACCTTTTTGCAGTAGATGAGAAACAAGAAATTTGTGAACAAATGCGTCAAATAGATCGCCAGAGGGACAGGACAAAACAAACTGATGGTAGTCCTATAGCTCTGTTTAACATGTTTGTTGATTGCTGCCGAAATCAGCTTCATATAGTATTGGCAATGAGTCCAATTGGAGATGCTTTCCGTAATCGCCTTCGTAAATTTCCTGCTCTTGTCAACTGCTGCACACTAGACTGGTTTCAG
Seq A exon
ACGTGGCCTGAAGATGCATTGGAAGCAGTTGCCTCTCGCTTCTTGGAAGATGTTGAAATGTCAGAAGAAACTCGAAGTGGGTGTATTGACATGTGTAAAAGCTTTCATACGTCTACCATTGTTTTATCTGATTTATACCATGCGGAGCTTCAAAGACACAACTATGTTACACCTACTTCGTACTTGGAATTGATCTCCACTTTTAAAACTCTGCTTGAAAAGAAGCGCAC
Seq C2 exon
TAAGGTGATGGAAATGAAAAGAAGATATGAAGTTGGCTTGGAGAAACTGAACTATGCTACATCTCAAGTCGCCTCGATGCAGTCTGAGCTGGAAGCCCTGCAGCCTCAGCTGCGGGAAGCTAGCAAGCAGGTTGATGAGATGATGGTGGTAATTCAGAAAGAATCCTCAGAAGTAGCCAAAACTGAAGAAATTGTGAAAGCTGATGAAGCAGTGGCAAATGAGCAAGCTATGGCTGCCAAAGCCATCAAAGATGAATGTGATGCTGACTTAGCTCAAGCAATGCCTTATTTAGAAGCTGCTCTGGCTGCTCTTGACACTCTAACTGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'45-54,'45-52,46-54=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=WD(100=9.6),PF127802=AAA_8=PU(73.2=68.4)
A:
PF127802=AAA_8=PD(26.1=92.2)
C2:
PF127772=MT=PU(29.3=92.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTCCGTAATCGCCTTCG
R:
TGCTCATTTGCCACTGCTTCA
Band lengths:
292-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]