RnoEX0028580 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60197781-60204929:-
Coord C1 exon
chr9:60204057-60204929
Coord A exon
chr9:60202003-60202232
Coord C2 exon
chr9:60197781-60198111
Length
230 bp
Sequences
Splice sites
3' ss Seq
AATATTCATTTTAAATTTAGTCA
3' ss Score
3.36
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
ACGCCCTCCTGGTGGGGGTTGGCGGGAGCGGAAGGCAGTCAGTCACCCGACTGGCTGCACACATGGCGGATTATTCACTCTTCCAGGTGGAGATCTCCAAGGGCTATGGTAGCCACGAGTGGCATGAAGATCTAAAAGTGATCTTAAGAAAATGTGCAGAAGGTGACATGCAGGGGGTCTTCCTGTTCACAGACACGCAGATCAAGAGAGAGTCGTTTCTAGAAGATGTCAACAATCTCCTAAATGCTGGGGAGGTTCCAAACCTCTTTGCTTTAGATGAGAAGCAAGAAATATGTGAAAAGATGCGTCAGTTAGATCGTCAACGGGATAAAACCAAACAGACAGACGGGAGTCCCATAGCTCTTTTCAACATGTTTATTGACCGCTGCCGCAACCAGCTTCACGTGGTCCTAGCCATGAGTCCCATCGGAGATGCATTTCGGATTCGTCTTCGGAAATTCCCTGCTCTTGTTAACTGCTGTACCATTGATTGGTTTCAG
Seq A exon
TCATGGCCAGAAGACGCACTGGAAGCAGTTGCTTCACGGTTCCTGGAAGACATTGAGATGTCAGAGGAAATCCGGGAAGGCTGTATTGACATGTGTAAAAGCTTCCACACTTCTACTATCAACTTATCAACGACCTTCCATAATGAACTTCAAAGATATAATTATGTGACTCCCACCTCTTACCTGGAATTGATCTCTACCTTCAAACTGTTGTTAGAAAAGAAAAGAAA
Seq C2 exon
CGAAGTGATGAAAATGAAAAGGAGATACGAGGTGGGTTTGGATAAACTGGACTCGGCTTCGTCTCAGGTGGCCACCATGCAGGGCGAGCTGGAGGCACTCCATCCTCAGTTAAAAGTTGCCAGCAGACAGGTTGATGACATGATGATAATGATTGAGAAGGAGTCCATTGAGGTTGCCAAAACTGAGAAGATCGTGAAAGCTGACGAGACAGTAGCAAACGACCAAGCCATGGCCGCCAAAGCCATTAAAGACGAATGCGATGCCGACTTGGCCGAAGCCCTACCCATCCTGGAGTCTGCGCTGGCTGCCCTTGATACCCTGACCGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'42-44,'42-43,43-44
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(0.1=0.0),PF127802=AAA_8=PU(73.2=68.2)
A:
PF127802=AAA_8=PD(26.1=92.2)
C2:
PF127772=MT=PU(29.5=92.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTAGCCATGAGTCCCAT
R:
ACTGTCTCGTCAGCTTTCACG
Band lengths:
307-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]