BtaEX6010451 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84828531-84841333:-
Coord C1 exon
chr2:84841179-84841333
Coord A exon
chr2:84832722-84832912
Coord C2 exon
chr2:84828531-84828664
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGATTTTATTCCAGTGT
3' ss Score
8.53
5' ss Seq
AAGGCCAGT
5' ss Score
0.92
Exon sequences
Seq C1 exon
GAATGCAAGAAGGTGGCCTCTGATGATAGATCCTCAAGGTCAGGCTAATAAATGGATCAAGAACATGGAAAAAACCAATAGTCTTCACCTAATTAAATTAAGTGACCCTGACTATGTCAGAACTTTGGAAAACTGCATCCAATTTGGTACCCCTG
Seq A exon
TGTTGCTAGAAAATGTGGGAGAAGAACTGGATCCGATCCTGGAACCTCTTCTACTAAAACAGACCTTTAAGCAGGGTGGAAGTACATGCATACGACTTGGGGACTCTACCATTGAATATTCACCAGACTTCCGCTTTTATATTACTACCAAGCTAAGAAATCCTCATTATCTTCCTGAAACTTCAGTAAAG
Seq C2 exon
GTGACACTGTTAAACTTCATGATCACTTCTGAGGGGATGCAGGATCAGCTTTTGGGAATTGTGGTAGCACGAGAAAGGCCAGATCTTGAAGAAGAAAAGCAAGCCTTAATATTACAAGGAGCTGAAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'51-56,'51-55,52-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.5=100)
A:
PF127812=AAA_9=FE(27.3=100)
C2:
PF127812=AAA_9=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCAAGAAGGTGGCCTCT
R:
AAGATCTGGCCTTTCTCGTGC
Band lengths:
242-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]