RnoEX0028581 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60150153-60164639:-
Coord C1 exon
chr9:60164485-60164639
Coord A exon
chr9:60157002-60157192
Coord C2 exon
chr9:60150153-60150286
Length
191 bp
Sequences
Splice sites
3' ss Seq
ATGATTATTTCTGCCTTTAGTGT
3' ss Score
7.41
5' ss Seq
AAGGCCAGT
5' ss Score
0.92
Exon sequences
Seq C1 exon
GAATGCAAGAAGGTGGCCTCTGATGATAGACCCTCAAGGTCAGGCTAACAAATGGATCAAGAACATGGAGAAAACCAATAGTCTTCAGCTTATTAAACTAAGTGACCCTGACTACGTGAGGACTCTGGAAAACTGTATCCAATTTGGAACTCCTG
Seq A exon
TGTTACTAGAAAATGTGGGAGAAGAACTGGACCCGATTCTAGAGCCTCTTCTGTTGAAGCAGACCTTCAAACAGGGTGGGAGCACATGTATCCGGCTTGGAGACTCCACTATTGAATATGCTCCTGACTTCCGCTTCTACATCACAACCAAGCTGAGAAACCCACACTATCTCCCAGAGACGTCAGTGAAG
Seq C2 exon
GTCACATTATTAAACTTCATGATAACTCCCGAGGGAATGCAGGATCAGCTTTTGGGAATTGTAGTGGCTCGGGAAAGGCCAGACCTTGAAGAAGAAAAGCAAGCCTTGATACTGCAAGGAGCTGAGAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'52-52,'52-51,53-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.5=100)
A:
PF127812=AAA_9=FE(27.3=100)
C2:
PF127812=AAA_9=FE(19.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCAAGGTCAGGCTAACAA
R:
TTGTTCTCAGCTCCTTGCAGT
Band lengths:
256-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]