MmuEX0015028 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46325450-46346511:+
Coord C1 exon
chr1:46325450-46325604
Coord A exon
chr1:46333806-46333996
Coord C2 exon
chr1:46346378-46346511
Length
191 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTTTCTGCCTTTAGTGT
3' ss Score
9.1
5' ss Seq
AAGGCCAGT
5' ss Score
0.92
Exon sequences
Seq C1 exon
GAATGCAAGAAGGTGGCCTCTGATGATAGACCCTCAAGGTCAGGCTAATAAGTGGATCAAGAACATGGAGAAAACCAATAGCCTTCAGCTCATTAAACTAAGTGACCCTGACTATGTCAGAACTCTGGAAAACTGTATCCAGTTTGGAACTCCTG
Seq A exon
TGTTGCTAGAAAATGTGGGAGAAGAACTGGACCCAATTCTAGAGCCTCTTTTGTTGAAGCAGACCTTCAAGCAGGGTGGGAGCACATGCATTCGGCTTGGAGACTCCACAATTGAGTATGCTCCCGACTTCCGCTTCTACATCACAACCAAGCTGAGGAACCCGCACTATCTCCCAGAGACGTCAGTGAAG
Seq C2 exon
GTCACATTGTTAAACTTCATGATAACTCCTGAGGGAATGCAGGATCAACTTTTGGGAATCGTAGTGGCAAGGGAAAGGCCAGACCTCGAAGAAGAAAAGCAATCCTTGATAGTACAAGGAGCTGACAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'52-50,'52-49,55-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.101
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.5=100)
A:
PF127812=AAA_9=FE(27.3=100)
C2:
PF127812=AAA_9=PU(47.5=97.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCAAGAAGGTGGCCTCTG
R:
TTTCTTCTTCGAGGTCTGGCC
Band lengths:
251-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: