GgaEX1020221 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10689473-10695147:-
Coord C1 exon
chr7:10694993-10695147
Coord A exon
chr7:10693213-10693403
Coord C2 exon
chr7:10689473-10689606
Length
191 bp
Sequences
Splice sites
3' ss Seq
ACTCTTATGTTACATTGAAGTGC
3' ss Score
3.39
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TAATGCAAGAAGATGGCCTCTTATGATAGATCCTCAGGGTCAAGCAAATAAATGGATAAAGAATATGGAAAAAGTCAATAACCTGCATGTAATCAAGCTCAGCGACCCTCAGTTTGTTACGACACTGGAAAATTGCATTCAGTTTGGCAGTCCTG
Seq A exon
TGCTTCTTGAGAATATTGGAGAAGAACTGGATCCTATTCTAGAGCCACTCTTGCTCAAACAGACATTTAAGCAGTCAGGAAGTATATGCATTTGCCTCGGCGACTCCACTATTGAGTATGCTCCCGAATTCCGCTTTTATATCACTACTAAGCTGAGAAATCCACATTATCTTCCTGAAATATCAGTCAAG
Seq C2 exon
GTAACATTATTGAATTTCATGATAACTCCAGAAGGAATGCAGGATCAGCTTCTTGGAATAGTAGTTGCAAGAGAAAGACCAGATCTTGAAGGAGAAAAACAAGCCCTCATCCTTCAAGGGGCTGCGAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.5=100)
A:
PF127812=AAA_9=FE(27.3=100)
C2:
PF127812=AAA_9=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCTCAGGGTCAAGCAAA
R:
CCCTTGAAGGATGAGGGCTTG
Band lengths:
248-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]