DreEX6036424 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25169537-25172431:-
Coord C1 exon
chr9:25172277-25172431
Coord A exon
chr9:25171421-25171611
Coord C2 exon
chr9:25169537-25169670
Length
191 bp
Sequences
Splice sites
3' ss Seq
CCATCTTTATTGTTTTGTAGTGT
3' ss Score
7.69
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAATGCAAGGAGGTGGCCCTTGATGATTGACCCTCAGGGCCAGGCCAACAAGTGGCTGAAGAACATGGAGAAATCCAACAGTCTCCACGTGATCAAGCTCAGTGATGCCGACTTTGTGCGCACACTAGAAAACTGCATCCAATTTGGCACTCCAG
Seq A exon
TGTTGCTGGAGAATGTTGGGGAAGAACTGGACCCCATACTCGAGCCCCTGCTGCTGAAACAAACTTTTAAACAGGGTGGCAGTGTCTGCATTCGGCTGGGTGACTCCACTATTGAATATGCACCAGATTTCCGCTTTTATATAACAACTAAGTTACGAAATCCACATTATCTACCTGAGGTCTCCGTCAAG
Seq C2 exon
GTGACCCTGCTGAACTTCATGATCACCCCAGAGGGGATGCAGGACCAGCTGCTGGGCATTGTGGTGGCCAGAGAGAGACCTGACCTTGAGGAGGAGAAACAAGCCCTCATCGTACAGGGAGCTGAGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'48-49,'48-48,49-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(22.6=100)
A:
PF127812=AAA_9=FE(27.4=100)
C2:
PF127812=AAA_9=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGGCCCTTGATGATTG
R:
AGGGCTTGTTTCTCCTCCTCA
Band lengths:
254-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]