RnoEX0028593 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60129717-60157192:-
Coord C1 exon
chr9:60157002-60157192
Coord A exon
chr9:60133379-60133573
Coord C2 exon
chr9:60129717-60129809
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATCATGTTTGTTTACCACAGATT
3' ss Score
8.35
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
TGTTACTAGAAAATGTGGGAGAAGAACTGGACCCGATTCTAGAGCCTCTTCTGTTGAAGCAGACCTTCAAACAGGGTGGGAGCACATGTATCCGGCTTGGAGACTCCACTATTGAATATGCTCCTGACTTCCGCTTCTACATCACAACCAAGCTGAGAAACCCACACTATCTCCCAGAGACGTCAGTGAAG
Seq A exon
ATTAACAAAGCAGAGTGGAGATTTCTGCTCACTGGTGGCATTGGGCTGGATAATCCTTATACCAACCCTTGCACATGGCTTCCTCAAAAGTCCTGGGATGAGATTTGCCGACTAGATGAATTACATGCCTTCAAGACCATTCGCAGGGAGTTTATGCGCTTAAAGGAGGGATGGAAAAAAGTATATGATAGTATG
Seq C2 exon
GAGCCACACCATGAGATATTTCCTGAAGAGTGGGAGAATAAAGCAAATGATTTTCAAAGGATGCTTATTATCCGTTGCTTGAGGCCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984_MULTIEX2-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(27.3=100)
A:
PF0302810=Dynein_heavy=PU(6.9=75.4)
C2:
PF0302810=Dynein_heavy=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACCCGATTCTAGAGCC
R:
CTGGCCTCAAGCAACGGATAA
Band lengths:
254-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]