GgaEX1020215 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10682133-10686396:-
Coord C1 exon
chr7:10686270-10686396
Coord A exon
chr7:10685030-10685224
Coord C2 exon
chr7:10682133-10682225
Length
195 bp
Sequences
Splice sites
3' ss Seq
AGCAGTGTTTTTCTCTGCAGATT
3' ss Score
9.42
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GTTGAAGATTCTTAAGAATCATTTCACTTACTCACTTTATGTCAATATCTGTCGCTCACTGTTTGAAAAGGACAAGCTGCTCTTCTCTTTTTGTCTAACTGTGAACCTCCTGAAATATGAGAAAATG
Seq A exon
ATTGATGAGGATGAGTGGAAATTTCTGTTGACTGGTGGCATAGGCTTGGATAATCCCTTCTCTAATCCATGCACCTGGCTTCCTCCACAATCATGGGATGAAATTTGTCGGCTGGAAGACTTGCCATGCTTCACAAACATTCGTAAGGATTTTAATCGACTTAAGGATGGATGGAAATTGGTGTATGACAGCTTG
Seq C2 exon
GACCCTCAGCATGAGGATTTTCCTGCAGAGTGGCAAGAAAAGCTGGGAGAATTCCAAAGGATGCTTGTCATTCGCTGTCTGAGACCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'45-46,'45-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(6.9=75.4)
C2:
PF0302810=Dynein_heavy=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTTATGTCAATATCTGTCGCTCA
R:
TGTCAGGTCTCAGACAGCGAA
Band lengths:
186-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]