GgaEX1020215 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9194167-9198430:-
Coord C1 exon
chr7:9198304-9198430
Coord A exon
chr7:9197064-9197258
Coord C2 exon
chr7:9194167-9194259
Length
195 bp
Sequences
Splice sites
3' ss Seq
AGCAGTGTTTTTCTCTGCAGATT
3' ss Score
9.42
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GTTGAAGATTCTTAAGAATCATTTCACTTACTCACTTTATGTCAATATCTGTCGCTCACTGTTTGAAAAGGACAAGCTGCTCTTCTCTTTTTGTCTAACTGTGAACCTCCTGAAATATGAGAAAATG
Seq A exon
ATTGATGAGGATGAGTGGAAATTTCTGTTGACTGGTGGCATAGGCTTGGATAATCCCTTCTCTAATCCATGCACCTGGCTTCCTCCACAATCATGGGATGAAATTTGTCGGCTGGAAGACTTGCCATGCTTCACAAACATTCGTAAGGATTTTAATCGACTTAAGGATGGATGGAAATTGGTGTATGACAGCTTG
Seq C2 exon
GACCCTCAGCATGAGGATTTTCCTGCAGAGTGGCAAGAAAAGCTGGGAGAATTCCAAAGGATGCTTGTCATTCGCTGTCTGAGACCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'64-70,'64-69,66-70
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(25.1=75.4)
C2:
PF0302810=Dynein_heavy=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTTATGTCAATATCTGTCGCTCA
R:
TGTCAGGTCTCAGACAGCGAA
Band lengths:
186-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]