DreEX6036427 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25158858-25164756:-
Coord C1 exon
chr9:25164630-25164756
Coord A exon
chr9:25159070-25159264
Coord C2 exon
chr9:25158858-25158950
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCCATCTCTGTTAGGTG
3' ss Score
9.25
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
Exon sequences
Seq C1 exon
ACTCCAGATTCTGAAGGACCATTTCACGTACTCACTTTACTGCAACGTGTGTCGCTCTTTGTTTGAGAAGGACAAACTCCTCTTCTCCTTCTGCCTCACTGTCAACCTGCTCAAACACAACAAGCTT
Seq A exon
GTGGATGAGAAAGAATGGCGATTTCTTTTGACAGGTGGTGTGGGTCTGGATAACCCTCATTCAAACCCATGCACCTGGTTGCCCAAAACATCCTGGGATGAGATCTGTCGCCTGGATGAGATGGAGCGCTTTAAAGGCCTGCGCAAAGACCTGGCTCGACTCCGGGAGGGCTGGAAAGAGGTTTATGATAGCAAG
Seq C2 exon
GATCCTCATCACACTGATTTCCCTTCAGAGTGGCAGGAAAAATTAGGACAGTTCCAAAGGATGCTGATTATAAGATGCTTAAGGCCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'53-53,'53-52,55-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(6.9=75.4)
C2:
PF0302810=Dynein_heavy=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGATTCTGAAGGACCA
R:
CTTGTCTGGCCTTAAGCATCT
Band lengths:
220-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]