BtaEX6010453 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84817389-84822963:-
Coord C1 exon
chr2:84822837-84822963
Coord A exon
chr2:84821694-84821888
Coord C2 exon
chr2:84817389-84817481
Length
195 bp
Sequences
Splice sites
3' ss Seq
CGCTACTTTGTTTTCCAAAGATT
3' ss Score
7.03
5' ss Seq
TTGGTATGC
5' ss Score
5.91
Exon sequences
Seq C1 exon
GCTTCAAATTCTCAAGGATCACTTCACTTATTCCCTTTATGTTAATGTCTGCCGATCCCTCTTTGAAAAGGATAAACTGCTTTTTTCCTTTTGTCTAACTGTAAATCTGCTGATACATGAGCGATTG
Seq A exon
ATTAATAAAGCCGAGTGGAGATTTCTGTTAACTGGTGGCATTGGCCTGGATAATCCTCATGCCAACCCTTGTACATGGCTTCCTCAAAAATCTTGGGATGAAATATGTCGACTGGACGATTTGTCTGCCTTCAAAAACATTCGTCGGGAGTTTATGCGCTTAAAGGATGGATGGAAAAAAGTATATGACAGTTTG
Seq C2 exon
GAACCACATCATGAGGTTTTTCCTGACGATTGGGAAGATAAAACGAGTGAGTTTCAACGGATGCTTATCATTCGTTGCTTGAGGCCGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'55-60,'55-59,56-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(6.9=75.4)
C2:
PF0302810=Dynein_heavy=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAAATTCTCAAGGATCACT
R:
CTTGTCCGGCCTCAAGCAAC
Band lengths:
220-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]