HsaEX6017591 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:195806740-195809871:-
Coord C1 exon
chr2:195809745-195809871
Coord A exon
chr2:195808682-195808876
Coord C2 exon
chr2:195806740-195806832
Length
195 bp
Sequences
Splice sites
3' ss Seq
CGCTGCCTTGTTTTCCAAAGATT
3' ss Score
8
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GCTTCAGATTCTCAAGGATCACTTTACTTATTCACTGTATGTTAATGTCTGCCGGTCACTCTTTGAAAAGGATAAGCTGCTCTTTTCCTTTTGTCTAACCATAAATCTACTGCTGCATGAGCGGGCG
Seq A exon
ATTAATAAAGCTGAGTGGAGATTTCTGCTAACTGGTGGCATTGGACTGGATAATCCTTATGCCAACCTTTGTACATGGCTTCCTCAGAAATCCTGGGATGAAATATGTCGATTAGATGATTTGCCTGCCTTCAAAACCATTCGTAGAGAGTTTATGCGCTTAAAGGATGGATGGAAGAAAGTATATGATAGTTTG
Seq C2 exon
GAACCACACCATGAGGTTTTCCCTGAAGAATGGGAAGATAAAGCAAATGAGTTTCAAAGGATGCTTATTATTCGTTGCTTGAGGCCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'87-94,'87-92,88-94=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(56.3=75.4)
C2:
PF0302810=Dynein_heavy=FE(34.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGATTCTCAAGGATCACT
R:
CTTGTCTGGCCTCAAGCAACG
Band lengths:
220-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains