MmuEX0015032 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46355093-46360483:+
Coord C1 exon
chr1:46355093-46355219
Coord A exon
chr1:46356659-46356853
Coord C2 exon
chr1:46360391-46360483
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATGATGTTTGTTTACCACAGATT
3' ss Score
8.44
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCTTCAGATTCTCAGAGATCACTTCACCTACTCACTCTATGTCAACATCTGCCGCTCGCTCTTCGAAAAGGACAAGTTGCTGTTTTCATTTTGTCTCACTGTGAATCTGCTGATACATGAGAACGCG
Seq A exon
ATTAACAAAACAGAGTGGAGATTTCTACTCACTGGTGGCATTGGGCTGGATAATCCTTATACCAACCCTTGCACATGGCTTCCTCAAAAGTCCTGGGATGAGATTTGCCGACTAGATGACTTACCTGCCTTTAAGACCATTCGCAGGGAATTTATGCGCTTAAAGGATGGATGGAAAAAAGTATATGATAGTATG
Seq C2 exon
GAGCCACACCATGAGATGTTTCCAGAAGACTGGGAAAATAAAGCAAACGACTTTCAGAGGATGCTTATTATCCGTTGCTTGAGGCCAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'58-54,'58-53,59-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(7.4=45.4)
A:
PF0302810=Dynein_heavy=PU(11.3=75.4)
C2:
PF0302810=Dynein_heavy=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGATTCTCAGAGATCACT
R:
CTTGTCTGGCCTCAAGCAACG
Band lengths:
220-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: