BtaEX6010452 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84822837-84828664:-
Coord C1 exon
chr2:84828531-84828664
Coord A exon
chr2:84827461-84827796
Coord C2 exon
chr2:84822837-84822963
Length
336 bp
Sequences
Splice sites
3' ss Seq
AATATTTTTTTTTATTCCAGGCA
3' ss Score
8.24
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTGACACTGTTAAACTTCATGATCACTTCTGAGGGGATGCAGGATCAGCTTTTGGGAATTGTGGTAGCACGAGAAAGGCCAGATCTTGAAGAAGAAAAGCAAGCCTTAATATTACAAGGAGCTGAAAACAAAAG
Seq A exon
GCAGTTAAAAGAAATAGAAGACAAGATTTTAGAAGTTCTTTCATCTTCGGAAGGCAATATATTAGAAGATGAAACTGCCATTAAGATATTATCTTCCTCCAAGGCTTTGGCTAATGAGATTTCTCAAAAGCAGGAAGTAGCCGAAGAGACAGAGAAGAAGATTGACAGCACCCGCATGGGCTATCGACCTATTGCCGTTCATTCCACCATCCTGTTTTTTTCTATTGCTGATTTAGCAAACATCGAGCCCATGTACCAATACTCACTGACCTGGTTTATTAACCTTTTCATCCTGTCTATTGAAAATTCAGAGAAGTCAGAAATTTTGTCAAAAAG
Seq C2 exon
GCTTCAAATTCTCAAGGATCACTTCACTTATTCCCTTTATGTTAATGTCTGCCGATCCCTCTTTGAAAAGGATAAACTGCTTTTTTCCTTTTGTCTAACTGTAAATCTGCTGATACATGAGCGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'53-58,'53-57,54-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(19.0=100)
A:
PF127812=AAA_9=PD(17.7=36.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACTGTTAAACTTCATGATCACT
R:
CAATCGCTCATGTATCAGCAGA
Band lengths:
260-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]