GgaEX1020212 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10686270-10689606:-
Coord C1 exon
chr7:10689473-10689606
Coord A exon
chr7:10688438-10688773
Coord C2 exon
chr7:10686270-10686396
Length
336 bp
Sequences
Splice sites
3' ss Seq
AAAATTTTATTTTATTATAGGCA
3' ss Score
6.76
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTAACATTATTGAATTTCATGATAACTCCAGAAGGAATGCAGGATCAGCTTCTTGGAATAGTAGTTGCAAGAGAAAGACCAGATCTTGAAGGAGAAAAACAAGCCCTCATCCTTCAAGGGGCTGCGAATAAAAG
Seq A exon
GCAACTAAAAGAAATAGAAGACAAGATTTTAGAAGTTCTTTCGGCTTCAGAAGGAAATATTTTGGAGGATGAAACTGCTATTAAGATATTGTCTTCTTCCAAAGTTCTGGCTAATGAGATTTCTGAAAAGCAAGCTGTAGCTGAAGAAACAGAAAAGAAGATTGATGCCACTCGTATGGGCTATCGTCCTATCTCTGTCCATTCATCAATCTTGTTTTTTTCTATTACTGATCTAGCCAACATTGAGCCTATGTATCAGTACTCTCTCATGTGGTTTATTAACCTTTTCATCATGTCTATAGATAACTCAGAGAAATCAGAAGATTTACAAACAAG
Seq C2 exon
GTTGAAGATTCTTAAGAATCATTTCACTTACTCACTTTATGTCAATATCTGTCGCTCACTGTTTGAAAAGGACAAGCTGCTCTTCTCTTTTTGTCTAACTGTGAACCTCCTGAAATATGAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(19.0=100)
A:
PF127812=AAA_9=PD(17.7=36.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTTCATGATAACTCCAGAAGGA
R:
TCTCATATTTCAGGAGGTTCACAGT
Band lengths:
246-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]