DreEX6036426 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25164630-25169670:-
Coord C1 exon
chr9:25169537-25169670
Coord A exon
chr9:25168961-25169296
Coord C2 exon
chr9:25164630-25164756
Length
336 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCATTTCCTTGTAGACA
3' ss Score
9.99
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
GTGACCCTGCTGAACTTCATGATCACCCCAGAGGGGATGCAGGACCAGCTGCTGGGCATTGTGGTGGCCAGAGAGAGACCTGACCTTGAGGAGGAGAAACAAGCCCTCATCGTACAGGGAGCTGAGAACAAGAG
Seq A exon
ACAGTTGCAGGAAATAGAGGATAAAATCCTAGAAGTCCTCTCTGCCTCAGAGGGCAATATTTTAGAAGATGAGACGGCTGTCCAGATCCTCTCTTCTTCTAAAGTTCTAGCCAATGAGATCTCTGAGAAACAAGCAATTGCTGAGGTTACTGAGCTGAAGATTGACCAGACACGCTTGGGCTACACTCCCATCGCCATCCACTCTGCAATTTTGTTTTTCTCCATTGCTGACTTGGCCAACATTGAGCCCATGTATCAGTACTCTCTAACCTGGTTCATCAATCTCTTCATCATGTCCATTGATAATTCCCAAAAAAGTGACCTTCTAGAAGAAAG
Seq C2 exon
ACTCCAGATTCTGAAGGACCATTTCACGTACTCACTTTACTGCAACGTGTGTCGCTCTTTGTTTGAGAAGGACAAACTCCTCTTCTCCTTCTGCCTCACTGTCAACCTGCTCAAACACAACAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'51-51,'51-50,52-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(19.1=100)
A:
PF127812=AAA_9=PD(17.8=36.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCCTGCTGAACTTCATGA
R:
GCTTGTTGTGTTTGAGCAGGT
Band lengths:
259-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]