HsaEX6017589 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196674469-196682553:-
Coord C1 exon
chr2:196682420-196682553
Coord A exon
chr2:196681352-196681687
Coord C2 exon
chr2:196674469-196674595
Length
336 bp
Sequences
Splice sites
3' ss Seq
AAAATTTTGTTTTATTCCAGGCA
3' ss Score
7.73
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTAACATTATTAAACTTCATGATAACCCCTGAGGGAATGCAAGATCAGCTTCTGGGAATTGTGGTGGCACAAGAAAGGCCAGACCTTGAAGAAGAAAAGCAAGCCTTGATATTACAAGGAGCTGAAAATAAAAG
Seq A exon
GCAGTTAAAAGAAATAGAAGACAAGATTTTAGAAGTTCTTTCATCTTCGGAAGGCAATATATTAGAAGATGAAACTGCTATTAAGATATTATCTTCCTCCAAGGCCTTGGCTAATGAGATTTCTCAGAAGCAGGAAGTAGCCGAAGAGACAGAGAAAAAGATTGACACCACCCGCATGGGCTATCGTCCTATTGCCATCCATTCTTCCATCCTATTTTTTTCTCTTGCTGATTTAGCCAACATTGAGCCCATGTACCAGTATTCACTGACCTGGTTTATTAACCTTTTCATCCTGTCTATTGAAAATTCAGAGAAATCAGAAATTTTGGCAAAAAG
Seq C2 exon
GCTTCAGATTCTCAAGGATCACTTTACTTATTCACTGTATGTTAATGTCTGCCGGTCACTCTTTGAAAAGGATAAGCTGCTCTTTTCCTTTTGTCTAACCATAAATCTACTGCTGCATGAGCGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'57-58,'57-57,58-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(19.0=100)
A:
PF127812=AAA_9=PD(17.7=36.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAACTTCATGATAACCCCTGAGG
R:
CTCATGCAGCAGTAGATTTATGGT
Band lengths:
246-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)