BtaEX6010462 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84773343-84779930:-
Coord C1 exon
chr2:84779753-84779930
Coord A exon
chr2:84776047-84776150
Coord C2 exon
chr2:84773343-84773620
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTCTTTTATATTTAGGTG
3' ss Score
10.63
5' ss Seq
GTGGTTAGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
CAATGGTACGAGGTCGGGCCTCCTCCAGTCTTCTGGCTTTCTGGCTTCTTCTTCACACAAGCTTTCCTGACTGGTGCCCAGCAAAACTATGCCAGGAAACACACCATCCCCATTGATCTTCTTGGGTTTGACTATGAAGTAATGGAAGACAAAGAATACAAGCATGCTCCAGAAGATG
Seq A exon
GTGTTTTCATTCACGGACTATTTCTGGACGGAGCTTCCTGGAATAGAAAGATCAAGAAACTTGCAGAATCACATCCCAAAATTCTTTATGATACAGTGCCTGTG
Seq C2 exon
ATGTGGCTAAAGCCCTGTAAGAGAACAGATATACCAGAACGACCAAGTTACACTGCCCCATTGTATAAGACAAGTGAGCGGAGAGGAACACTGTCAACCACTGGCCATTCTACGAATTTTGTGATTGCCATGATTCTTCCCTCTGACCAACCCAAGGAACACTGGATTGGACGGGGTGTAGCGCTGCTGTGTCAACTTAATTCATAATTAGAAGGTGTCATTTCCCTGTTTTCGTATTCTTTGTTAGATGAGTCAGTAGAAAATATATTTTACTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'68-74,'68-73,69-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.3=100)
A:
PF0302810=Dynein_heavy=FE(4.8=100)
C2:
PF0302810=Dynein_heavy=PD(9.0=92.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAGGAAACACACCATCC
R:
CCAGTGTTCCTTGGGTTGGTC
Band lengths:
255-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]