DreEX0027485 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25140260-25146603:-
Coord C1 exon
chr9:25146426-25146603
Coord A exon
chr9:25143735-25143838
Coord C2 exon
chr9:25140260-25140720
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCGTGCTTCTGTAAGGTG
3' ss Score
6.28
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GACTGGTACATGGACGGCATGCCTGCAGTGTTCTGGATGTCCGGTTTCTTTTTCACTCAGGCGTTTCTCACTGGAGGCCAGCAGAATTACGCCCGAAGATACACCATCCCCATTGACCTGCTCAGCTTCGACTTTGAAGTCATGGAGGACAAAGAATATAAAAACCCACCAGAGGATG
Seq A exon
GTGTTTACATCCGTGGTCTTTTTTTGGATGGTGCCCGATGGGATCGAAGAACCAAACGCTTGGCAGAGTCATTTCCCAAAATCCTGCACGACACCATGCCTGTG
Seq C2 exon
ATATGGCTGAAGCCCATGAAGAAGCAGGACATTCCAGAGCGCCAGTGCTACATTTCTCCAGTTTACAAGACCAGTGAGAGACGCGGAACCCTCTCTACTACCGGACACTCCACAAACTACGTCATCTCAATGGCGCTGAATTCAGACGTGCCTCCAGAGCACTGGATCCGTCGTGGAGTGGCATTACTGTGTCAGCTGAACTCATAGATTCACTGCTCGGCTTCTAGTGTGCTTCACATCAGTAAAGGTTCTGTGAGTAAACAATGCTTATGTAGAAAAAGCCTCAGATATGATTCAGTGAAGGTTTCTGTTTAAAGACAAAAACTCAATTTCACAAGTGTCAAAATGTTTATTAATATCAGTAGCAATGATAAATTTATATAAAAAATATAGGTTTTTATCTAAAAAGTATTTCTATAGAGTAGAACATTTTAAGTCATTTTTAATAAGCGGAGACTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.2=100)
A:
PF0302810=Dynein_heavy=FE(5.9=100)
C2:
PF0302810=Dynein_heavy=PD(9.0=92.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGTGTTCTGGATGTCC
R:
GTAGTAGAGAGGGTTCCGCGT
Band lengths:
258-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]